Publications
Scientific publications provide an in-depth look into the details of our research. We strive to ensure that all our publications are open-access.
A list of our publications with their respective DOIs can be found below.
For our latest publications please visit Google Scholar.
Deep water instrument for microbial identification, quantification, and archiving
Pargett, D.M., Jensen, S.D., Roman, B.A., Preston, C.M., Ussler, W., Girguis, P.R., Marin, R., Birch, J.M., and Scholin, C.A., 2013, September. In 2013 OCEANS-San Diego, 1-6. IEEE.
Microbial anaerobic degradation of short chain alkanes in marine hydrocarbon cold seeps
Bose, A., Rogers, D.R., Adams, M.M., Joye, S.B., and Girguis, P.R. 2013. Frontiers in Microbiology, 4. doi:10.3389/fmicb.2013.00386
Capitalizing on expertise in marine education and outreach to broaden impacts
Girguis, P.R., deCharon, A., and Herren, C.M. 2013. Current: The Journal of Marine Education, 28(3), 39-40.
Redox effects on the microbial degradation of refractory organic matter in marine sediments
Reimers, C.E., Alleau, Y., Bauer, J., Delaney, J., Schrader, P., Stecher, H.A., and Girguis, P.R. 2013. Geochimica et Cosmochimica Acta, 121(15), 582-598. doi:10.1016/j.gca.2013.08.004
Sensors and acoustic modems powered by Benthic Microbial Fuel Cells at the MARS observatory
Schrader, P.S., Doolan, C., Reimers, C.E., Girguis, P.R., Wolf, M., and Green, D., 2013, September. In 2013 OCEANS-San Diego, 1-6. IEEE.
Oxygen, ecology, and the Cambrian radiation of animals
Sperling, E.A., Frieder, C.A., Raman, A.V., Girguis, P.R., Levin, L.A., and Knoll, A.H. 2013. Proceedings of the National Academy of Sciences 10(33), 13446-13451. doi:10.1073/pnas.1312778110
Autonomous in situ quantitative PCR in the deep sea: Molecular surveys of aerobic methanotroph genes and gene expression using the deep-sea environmental processor
Ussler III, W., Tavormina, P., Preston, C., Marin III, R., Pargett, D., Jensen, S., Roman, B., Shah, S., Girguis, P.R., Birch, J.M., Orphan, and V., Scholin, C. 2013. Environmental Science and Technology. doi:10.1021/es4023199
Anaerobic oxidation of short-chain alkanes in hydrothermal sediment: potential influences on sulfur cycling and microbial diversity
Adams, M., Hoarfrost, A.L., Bose, A., Joye, S.B., and Girguis, P.R. 2013. Frontiers of Microbiology. doi:10.3389/fmicb.2013.00110
Respiration control of multicellularity in Bacillus subtilis by a complex of the cytochrome chain with a membrane-embedded histidine kinase
Kolodkin-Gal, I., Alex Elsholz, A., Muth, C., Girguis, P.R., Kolter, R., and Losick, R. 2013. Genes and Development. doi:10.1101/gad.215244.113
Characterizing the distribution and rates of heterotrophic sulfate reduction at Middle Valley hydrothermal vents
Frank, K., Rogers, D.R., Olins, H.C., Vidoudez, C. P-M., and Girguis, P.R. 2013. The ISME Journal. doi:10.1038/ismej.2013.17
Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts
Sanders, J.G., Beinart, R.A., Stewart, F.J., Delong, E.F., and Girguis, P.R. 2013. The ISME Journal. doi:10.1038/ismej.2013.45
Investigating microbial community and geochemical dynamics at hydrothermal vents using osmotically-driven continuous fluid samplers
Robidart, J.R., Song, P., Callister, S.J., Wheat, C.G., and Girguis, P.R. 2013. Environmental Science and Technology. doi:10.1021/es3037302
The science and applications of microbial genomics
Girguis, P.R., Choffnes, Eileen R., Leigh Anne Olsen, and Theresa M. Wizemann, et. al. Washington, D.C: The National Academies Press, 2013.
Characterizing the distribution of methane sources and cycling in the deep sea via in situ stable isotope analysis
Wankel, S.D., Huang, Y., Gupta, M., Leen, J.B., Provencal, B., Vidoudez, C., and Girguis, P.R. 2013. Environmental Science and Technology. doi:10.1021/es303661w
Low temperature geomicrobiology follows host rock composition along a geochemical gradient in Lau Basin
Sylvan, J.B., Sia, T.Y., Haddad, A.G., Briscoe, L.J., Toner, B.M., Girguis, P.R., and Edwards, K.J. 2013. Frontiers of Microbiology, 236. doi:10.3389/fmicb.2013.00061
Assessing the influence of physical, geochemical and biological factors on anaerobic microbial primary productivity within hydrothermal vent chimneys
Olins, H.C., Rogers, D.R., Frank, K., Vidoudez, C. P-M., and Girguis, P.R. 2013. Geobiology. doi:10.1111/gbi.12034
In situ chemistry and microbial community compositions in five deep-sea hydrothermal fluid samples from Irina II in the Logatchev field
Perner, M., Gonnella, G., Hourdez, S., Bohnke, S., Kurtz, S., and Girguis, P.R. 2013. Environmental Microbiology. doi:10.1111/1462-2920.12038